INTEGRATED ENVIRONMENT OF AUTOMATIZATION OF WORK WITH GREAT VOLUMES OF DATA IN GRID

Authors

  • А. О. Salnikov Information and Computer Center of Taras Shevchenko Kyiv National Universit
  • О. О. Sudakov Information and Computer Center of Taras Shevchenko Kyiv National Universit Institute of Molecular Biology and Genetics of NAS of Ukraine
  • О. І. Kornelyuk Institute of Molecular Biology and Genetics of NAS of Ukraine

DOI:

https://doi.org/10.11603/mie.1996-1960.2009.3.83

Abstract

Existing problems of interaction of the software and researchers with Grid-environment are analysed. The technique of creation of the integrated environment of automatization of work with great volumes of data in Grid is offered. Techniques are realised for automatization of problems of calculation of molecular dynamics of biological macromolecules. The integrated environment is introduced in virtual laboratory MolDynGrid for automatization of calculations at the solving of problems of computer structural biology.

References

Foster I., Kesselman C. The Grid: Blueprint for a New Computing Infrastructure. Second Edition. Elsevier, 2003 .

Foster I. The Anatomy of the Grid: Enabling Scalable Virtual Organizations/ Foster I., Kesselman C., Tuecke S. // International Journal of High Performance Computing Applications. - 2001. 15, №> 3. - P. 200-222.

Загородній А. Г. Грід - нова інформаційно-обчислювальна технологія для науки / Загородній А. Г., Зіновьев Г. М., Мартинов Є. С., Свистунов С. Я., Шадура В. Н. // Вісник НАН України. - 2005. - № 6. - C. 17-25.

Корнелюк О.І. Сучасні комп'ютерні Грід-технології та їх застосування в медичних дослідженнях / Корнелюк О.І., Мінцер О.П. // Медична інформатика та інженерія. - 2008.- Т. 1, № 1. - C. 23-29.

Oliveira I.C. A Grid requirements for the integration of biomedical information resources for health applications / Oliveira I.C.,Oliveira J.L.,Sanchez J.P.jLj'pez-Alonso VMartin-Sanchez F.,Maojo V,Sousa Pereira A//Methods Inf. Med.-2005. - Vol. 44, J№ 2. - P. 161-167.

Breton V Innovative in silico approaches to address avian flu using grid technology / Breton V, da Costa A.L., de Vlieger P., Kim Y.M., Maigne L., Reuillon R., Sarramia D., Truong N.H., Nguyen H.Q., Kim D., Wu Y.T. // Infect. Disord. Drug Targets. - 2009. - Vol. 9, №> 3. - P. 358-365.

Konagaya A. Trends in life science grid: from computing grid to knowledge grid / Konagaya A. // BMC Bioinformatics. - 2006. - Vol. 18, J№ 7, Suppl 5. - P. 10.

Rom6n I. Improving healthcare middleware standards with semantic methods and technologies / Rom6n I., Calvillo J.,

Roa L.M., Madinabeitia G. // Stud, Health Technol. Inform.-2008. - Vol. 137. - P. 181-189.

Tai K. BioSimGrid: towards a worldwide repository for biomolecular simulations / Tai K., Murdock S., Wu B., Ng M.H., Johnston S., Fangohr H., Cox S.J., Jeffreys P., Essex J.W., Sansom M.S. // Org. Biomol. Chem. - 2004. - Vol. 2, №> 22. - P. 3219-3221.

Salnikov A.O. Implementing the File Storage System in the Ukrainian Academic Grid Infrastructure / Salnikov A.O., Sliusar I.A., Sudakov O.O., Boyko YuV, Kornelyuk O.I. // Abstracts of 21th International CODATA Conference "Scientific Information for Society-from Today to the Future". - 2008. - P. 31.

Salnikov A.O. MolDynGrid Virtual Laboratory as a part of Ukrainian Academic Grid infrastructure / Salnikov A.O. , Sliusar I.A., Sudakov O.O., Savytskyi O.V., Kornelyuk O.I. // Proceedings of IEEE International Workshop on Intelligent Data Acquisition and Advanced Computing Systems: Technology and Applications. - 2009. - P. 59-63.

Kim B.G. Drug Screener-G: Towards an Integrated Environment for Grid-Enabled Large-Scale Virtual Screening and Drug Discovery / Kim B.G., Nhan N.D., Lee S., Hwang S., Breton B. // Fourth IEEE International Conference on eScience. - 2008. - P. 666-671.

Jin H. Components and workflow based Grid programming environment for integrated image-processing applications / Jin H., Zheng R., Zhang Q., Li Y. // Concurrency and Computation: Practice and Experience. - 2006. - Vol. 18, N° 14. -P 1857-1869.

Downloads

Published

2012-11-12

How to Cite

Salnikov А. О., Sudakov О. О., & Kornelyuk О. І. (2012). INTEGRATED ENVIRONMENT OF AUTOMATIZATION OF WORK WITH GREAT VOLUMES OF DATA IN GRID. Medical Informatics and Engineering, (3). https://doi.org/10.11603/mie.1996-1960.2009.3.83

Issue

No. 3 (2009)

Section

Articles

License

Journal Medical Informatics and Engineering  allows the author(s) to hold the copyright without registration

 

The majority of Medical Informatics and Engineering Open Access journals publish open access articles under the terms of the Creative Commons Attribution (CC BY) License which permits use, distribution and reproduction in any medium, provided the original work is properly cited. The remaining journals offer a choice of licenses.

 Результат пошуку зображень за запитом "CC-BY logo"

This journal is available through Creative Commons (CC) License  CC-BY 4.0