QSAR-ANALYSIS OF THE 4-THIAZOLIDINONE-RELATED LIBRARIES FOR THE PREDICITING OF ANTITRIPANOSOMAL PROPERTIES OF NOVEL DERIVATIVES
DOI:
https://doi.org/10.11603/mcch.2410-681X.2020.i4.11738Keywords:
thiazolidones, antitrypanosomal activityAbstract
Introduction. Derivatives of thiazolidinone and related heterocycles are a source of new antiparasitic agents, including molecules with antitrypanosomal properties. A number of studies of the quantitative structure – antitrypanosomal activity relationship based on different approaches of computer chemistry have been found in the relevant scientific sources. Although most studies belong to the so-called – multitarget, when the studied set include the results of other types of antiparasitic activities. Development of new QSAR-models of thiazolidinone derivatives with antitrypanosomal properties will allow to outline the directions of directed design of new antiparasitic agents based on thiazole and thiazolidinone cycles.
The aim of the study – to establish quantitative relationships between structure-antitrypanosomal activity within libraries of thizolidinones and related heterocycles.
Research Methods. The development of mathematical models based on QSAR-analysis was performed using the online platform Online Chemical Database.
Results and Discussion. Analysis of the quantitative structure-activity relationship was performed using a mathematical model of associative neural networks (ASNN: Associative Neural Networks) and the Random Forest regression method (RFR: Random Forest regression) based on set of compounds including isothiocoumarin-3-carboxylic acid derivatives, thiopyranothiazoles and 4-thiazolidinone-imidazothiadiazoles with the established trypanocidal activity against Trypanosoma brucei brucei and Trypanosoma brucei gambiense. The best predictive capacity for the group of isothiocoumarin-3-carboxylic acids and thiopyrano[2,3-d][1,3]thiazol-2-ones was calculated using the Random Forest algorithm. The model calculated on the basis of the Random Forest algorithm for the group of imidazothiadiazoles has the highest predictive power with a value of R2 = 0.96.
Conclusions. Based on the methods of associative neural networks and Random Forest regression, a series of prognostic models have been developed for the predicting of antiparasitic activity of different 4-thiazolidinone derivatives and further development of the optimization directions for novel biologically active molecules with trypanocidal properties.
References
Büscher, P., Cecchi, G., Jamonneau, V., & Priotto, G. (2017). Human african trypanosomiasis. The Lancet, 390 (10110), 2397-2409. Retrieved from: https://doi.org/10.1016/S0140-6736(17)31510-6
Filardy, A.A., Guimarães-Pinto, K., Nunes, M.P., Zukeram, K., Fliess, L., Pereira, L., Nascimento D.O., Conde L., & Morrot, A. (2018). Human kinetoplastid protozoan infections: here are we going next?. Frontiers in Immunology, 9, 1493. Retrieved from: https://doi.org/10.3389/fimmu.2018.01493.
Human African trypanosomiasis. [Internet]: https://www.who.int/data/gho/data/themes/topics/topic-details/GHO/ntd-human-african-trypanosomiasis (last access 4.11.2020).
Kryshchyshyn, A., Kaminskyy, D., Grellier, P., & Lesyk, R. (2014). Trends in research of antitrypanosomal agents among synthetic heterocycles. European Journal of Medicinal Chemistry, 85, 51-64. Retrieved from: https://doi.org/10.1016/j.ejmech.2014.07.092.
Kryshchyshyn, A., Kaminskyy, D., Grellier, P., & Lesyk, R. (2020). Thiazolidinone-related heterocyclic compounds as potential antitrypanosomal agents. In Azoles-Synthesis, Properties, Applications and Perspectives. IntechOpen. Retrieved from: https://doi.org/10.5772/intechopen.91861.
Alberto Castillo-Garit, J., Abad, C., Enrique Rodriguez-Borges, J., Marrero-Ponce, Y., & Torrens, F. (2012). A review of QSAR studies to discover new drug-like compounds actives against leishmaniasis and trypanosomiasis. Current Topics in Medicinal Chemistry, 12 (8), 852-865. Retrieved from: https://doi.org/10.2174/156802612800166756.
Martin, M.B., Sanders, J.M., Kendrick, H., de Luca-Fradley, K., Lewis, J.C., Grimley, J.S., Van Brussel, E.M., Olsen, J.R., Meints, J.A., Burzynska, A., Kafarski, P., Croft, S.L., & Oldfield, E. (2002). Activity of bisphosphonates against Trypanosoma brucei rhodesiense. Journal of Medicinal Chemistry, 45 (14), 2904-2914. Retrieved from: https://doi.org/10.1021/jm0102809.
Ferreira, L.G., & Andricopulo, A.D. (2013). Inhibitors of Trypanosoma brucei trypanothione reductase: comparative molecular field analysis modeling and structural basis for selective inhibition. Future Medicinal Chemistry, 5 (15), 1753-1762. Retrieved from: https://doi.org/10.4155/fmc.13.140.
Prado-Prado, F.J., García-Mera, X., & González-Díaz, H. (2010). Multi-target spectral moment QSAR versus ANN for antiparasitic drugs against different parasite species. Bioorganic & Medicinal Chemistry, 18 (6), 2225-2231. Retrieved from: https://doi.org/10.1016/j.bmc.2010.01.068.
Prado-Prado, F.J., Ubeira, F.M., Borges, F., & González-Díaz, H. (2010). Unified QSAR & network-based computational chemistry approach to antimicrobials. II. Multiple distance and triadic census analysis of antiparasitic drugs complex networks. Journal of Computational Chemistry, 31 (1), 164-173. Retrieved from: https://doi.org/10.1002/jcc.21292.
Sushko, I., Novotarskyi, S., Körner, R., Pandey, A.K., Rupp, M., Teetz, W., Brandmaier, S., et al. (2011). Online chemical modeling environment (OCHEM): web platform for data storage, model development and publishing of chemical information. Journal of Computer-aided Molecular Design, 25 (6), 533-554. Retrieved from: https://doi.org/10.1007/s10822-011-9440-2.
Kaminskyy, D., Kryshchyshyn, A., Nektegayev, I., Vasylenko, O., Grellier, P., & Lesyk, R. (2014). Isothiocoumarin-3-carboxylic acid derivatives: synthesis, anticancer and antitrypanosomal activity evaluation. European Journal of Medicinal Chemistry, 75, 57-66. Retrieved from: https://doi.org/10.1016/j.ejmech. 2014.01.028.
Kryshchyshyn, A.P., Kaminskyy, D.V., Zelisko, N.I., Khyluk, D.V., Grellier, F., & Lesyk, R.B. (2013). Vyvchennia protytrypanosomnoi aktyvnosti tiazolidynoniv ta sporidnenykh heterotsyklichnykh system [The study of the antityrpanosomal activity of thiazolidinones and related heterocyclic systems]. Zhurnal orhanichnoi i farmatsevtychnoi khimii – Journal of Organic and Pharmaceutical Chemistry, 11 (2), 57-62 [in Ukrainian].
Zelisko, N., Atamanyuk, D., Vasylenko, O., Grellier, P., & Lesyk, R. (2012). Synthesis and antitrypanosomal activity of new 6, 6, 7-trisubstituted thiopyrano [2, 3-d][1, 3] thiazoles. Bioorganic & Medicinal Chemistry Letters, 22 (23), 7071-7074. Retrieved from: https://doi.org/10.1016/j.bmcl.2012.09.091.
Kryshchyshyn, A., Kaminskyy, D., Karpenko, O., Gzella, A., Grellier, P., & Lesyk, R. (2019). Thiazolidinone/thiazole based hybrids–New class of antitrypanosomal agents. European Journal of Medicinal Chemistry, 174, 292-308. Retrieved from: https://doi.org/10.1016/j.ejmech.2019.04.052.
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