USE OF MODERN TOOLS OF DIGITAL PATHOLOGY IN THE DIAGNOSIS OF HEPATITIS

Authors

DOI:

https://doi.org/10.11603/mie.1996-1960.2024.1-2.14893

Keywords:

hepatitis , non-alcoholic steatohepatitis, metabolic fatty liver disease, liver fibrosis , mac- rophages, T-lymphocytes, METAVIR, image management system, computer model

Abstract

Background. In this work, the issues of using modern available tools of digital pathology (primarily open-source software) were considered, which can facilitate the work of the pathologist in the mor- phological diagnosis of hepatitis of various genesis and metabolic fatty liver disease. The purpose of the work was to adapt available software and develop separate modules for building an image man- agement system and analyzing them to establish morphological criteria for the development of liver fibrosis according to the METAVIR index based on the study of the role of different subpopulations of liver macrophages, sinusoidal endothelial cells and fibroblasts.

Materials and methods. Results. The main task was to analyze the available software, as well as to develop or refine its individual modules for building an image management system, viewing digital scans of micropreparations and simplifying the evaluation of the expression of immunohistochemical markers CD3, CD68, CD163, CD34 and α-SMA with the ultimate goal of simplifying the study of the role of different subpopulations of liver macrophages, sinusoidal endothelial cells and fibroblasts in progressive liver diseases and the development of fibrosis.
Conclusions. Based on the results of the work, it was established the possibility of developing software to study the number and ratio of different populations of macrophage cells, sinusoidal endo- thelial cells, fibroblasts and lymphocytes in liver tissue using open-source software. The software de- veloped and improved by us made it possible to create a convenient array of data from digital scans of micropreparations of liver tissues, with accelerated and convenient access to relevant data. The computer model created by us for recognizing and counting populations of liver cells with a positive and negative IGH reaction with monoclonal antibodies to CD3, CD34, CD68, CD163, α-SMA shows a certain difference with the reference assessment by a pathologist, but a statistically significant difference no differences were found between the results of the created model and the reference results. In the future, it is necessary to improve the developed model to increase its sensitivity in the sense of recognizing cells of a specific type.

References

Marengo, A., Jouness, R. I. K., Bugianesi, E. (2016). Progression and Natural History of Nonalcoholic Fatty Liver Disease in Adults. Clin Liver Dis, 20 (2), 313–324. DOI: 10.1016/j.cld.2015.10.010. DOI: https://doi.org/10.1016/j.cld.2015.10.010

Gill, M. G., Majumdar, A. (2020). Metabolic associated fatty liver disease: Addressing a new era in liver transplantation. World J Hepatol, 12 (12), 1168–1181. DOI: 10.4254/wjh.v12.i12.1168. DOI: https://doi.org/10.4254/wjh.v12.i12.1168

Ilchenko, V. V., Dyadyk, O. O., Zaritska, V. I., Beketova, Yu. I. (2022). The role of macrophages in the morpho- and pathogenesis of non-alcoholic steatohepatitis. Medychna informatyka ta inzheneriia [Medical informatics and engineering], 3 (59), 18–23. DOI: 10.11603/mie.1996-1960.2022.3.13367. [In Ukrainian]. DOI: https://doi.org/10.11603/mie.1996-1960.2022.3.13367

Goode, A., Gilbert, B., Harkes, J., Jukic, D., Satyanarayanan, M. (2013). OpenSlide. A vendor– neutral software foundation for digital pathology. J Pathol Inform, 4 (1), 4–27. DOI: 10.4103/2153-3539.119005. DOI: https://doi.org/10.4103/2153-3539.119005

Moore, J., Allan, C., Besson, S. et al. (2021). OME–NGFF: a next–generation file format for expanding bioimaging data–access strategies. Nat Methods, 18 (12), 1496–1498. DOI: 10.1038/s41592– 021–01326–w. DOI: https://doi.org/10.1038/s41592-021-01326-w

Helin, H., Tolonen, T., Ylinen, O., Tolonen, P., Näpänkangas, J., Isola, J. (2018). Optimized JPEG 2000 Compression for Efficient Storage of Histopathological Whole–Slide Images. J Pathol Inform, 9 (1), 9–20. DOI: 10.4103/jpi.jpi_69_17. DOI: https://doi.org/10.4103/jpi.jpi_69_17

Abbaszadeh Shahri, A., Shan, C., Larsson, S., Johansson, F. (2024). Normalizing Large Scale Sensor–Based MWD Data: An Automated Method toward A Unified Database. Sensors (Basel), 24 (4), 1209. DOI: 0.3390/s24041209. DOI: https://doi.org/10.3390/s24041209

Bankhead, P., Loughrey, M. B., Fernández, J. A. et al. (2017). QuPath: Open source software for digital pathology image analysis. Sci Rep, 7 (1), 16878. DOI: 10.1038/s41598-017-17204–5. DOI: https://doi.org/10.1038/s41598-017-17204-5

Stevens, M., Nanou, A., Terstappen, L. W. M. M., Driemel, C., Stoecklein, N. H., Coumans, F. A. W. (2022). StarDist Image Segmentation Improves Circulating Tumor Cell Detection. Cancers (Basel), 14 (12), 2916. DOI: 10.3390/cancers14122916. DOI: https://doi.org/10.3390/cancers14122916

Miao, R., Toth, R., Zhou, Y., Madabhushi, A., Janowczyk, A. (2021). Quick Annotator: an open– source digital pathology based rapid image annotation tool. J Pathol Clin Res, 7 (6), 542–547. DOI: 10.1002/cjp2.229. DOI: https://doi.org/10.1002/cjp2.229

Williams, B. J., Treanor, D. (2020). Practical guide to training and validation for primary diagnosis with digital pathology. J Clin Pathol, 73 (7), 418–422. DOI: 10.1136/jclinpath-2019-206319. DOI: https://doi.org/10.1136/jclinpath-2019-206319

Published

2025-02-12

How to Cite

Ilchenko, V. V. (2025). USE OF MODERN TOOLS OF DIGITAL PATHOLOGY IN THE DIAGNOSIS OF HEPATITIS. Medical Informatics and Engineering, (1-2), 67–73. https://doi.org/10.11603/mie.1996-1960.2024.1-2.14893

Issue

Section

Articles