INTEGRATED ENVIRONMENT OF AUTOMATIZATION OF WORK WITH GREAT VOLUMES OF DATA IN GRID

Authors

  • А. О. Salnikov Information and Computer Center of Taras Shevchenko Kyiv National Universit
  • О. О. Sudakov Information and Computer Center of Taras Shevchenko Kyiv National Universit Institute of Molecular Biology and Genetics of NAS of Ukraine
  • О. І. Kornelyuk Institute of Molecular Biology and Genetics of NAS of Ukraine

DOI:

https://doi.org/10.11603/mie.1996-1960.2009.3.83

Abstract

Existing problems of interaction of the software and researchers with Grid-environment are analysed. The technique of creation of the integrated environment of automatization of work with great volumes of data in Grid is offered. Techniques are realised for automatization of problems of calculation of molecular dynamics of biological macromolecules. The integrated environment is introduced in virtual laboratory MolDynGrid for automatization of calculations at the solving of problems of computer structural biology.

References

Foster I., Kesselman C. The Grid: Blueprint for a New Computing Infrastructure. Second Edition. Elsevier, 2003 .

Foster I. The Anatomy of the Grid: Enabling Scalable Virtual Organizations/ Foster I., Kesselman C., Tuecke S. // International Journal of High Performance Computing Applications. - 2001. 15, №> 3. - P. 200-222. DOI: https://doi.org/10.1177/109434200101500302

Загородній А. Г. Грід - нова інформаційно-обчислювальна технологія для науки / Загородній А. Г., Зіновьев Г. М., Мартинов Є. С., Свистунов С. Я., Шадура В. Н. // Вісник НАН України. - 2005. - № 6. - C. 17-25.

Корнелюк О.І. Сучасні комп'ютерні Грід-технології та їх застосування в медичних дослідженнях / Корнелюк О.І., Мінцер О.П. // Медична інформатика та інженерія. - 2008.- Т. 1, № 1. - C. 23-29.

Oliveira I.C. A Grid requirements for the integration of biomedical information resources for health applications / Oliveira I.C.,Oliveira J.L.,Sanchez J.P.jLj'pez-Alonso VMartin-Sanchez F.,Maojo V,Sousa Pereira A//Methods Inf. Med.-2005. - Vol. 44, J№ 2. - P. 161-167. DOI: https://doi.org/10.1055/s-0038-1633938

Breton V Innovative in silico approaches to address avian flu using grid technology / Breton V, da Costa A.L., de Vlieger P., Kim Y.M., Maigne L., Reuillon R., Sarramia D., Truong N.H., Nguyen H.Q., Kim D., Wu Y.T. // Infect. Disord. Drug Targets. - 2009. - Vol. 9, №> 3. - P. 358-365. DOI: https://doi.org/10.2174/1871526510909030358

Konagaya A. Trends in life science grid: from computing grid to knowledge grid / Konagaya A. // BMC Bioinformatics. - 2006. - Vol. 18, J№ 7, Suppl 5. - P. 10. DOI: https://doi.org/10.1186/1471-2105-7-S5-S10

Rom6n I. Improving healthcare middleware standards with semantic methods and technologies / Rom6n I., Calvillo J.,

Roa L.M., Madinabeitia G. // Stud, Health Technol. Inform.-2008. - Vol. 137. - P. 181-189.

Tai K. BioSimGrid: towards a worldwide repository for biomolecular simulations / Tai K., Murdock S., Wu B., Ng M.H., Johnston S., Fangohr H., Cox S.J., Jeffreys P., Essex J.W., Sansom M.S. // Org. Biomol. Chem. - 2004. - Vol. 2, №> 22. - P. 3219-3221. DOI: https://doi.org/10.1039/b411352g

Salnikov A.O. Implementing the File Storage System in the Ukrainian Academic Grid Infrastructure / Salnikov A.O., Sliusar I.A., Sudakov O.O., Boyko YuV, Kornelyuk O.I. // Abstracts of 21th International CODATA Conference "Scientific Information for Society-from Today to the Future". - 2008. - P. 31.

Salnikov A.O. MolDynGrid Virtual Laboratory as a part of Ukrainian Academic Grid infrastructure / Salnikov A.O. , Sliusar I.A., Sudakov O.O., Savytskyi O.V., Kornelyuk O.I. // Proceedings of IEEE International Workshop on Intelligent Data Acquisition and Advanced Computing Systems: Technology and Applications. - 2009. - P. 59-63. DOI: https://doi.org/10.1109/IDAACS.2009.5342989

Kim B.G. Drug Screener-G: Towards an Integrated Environment for Grid-Enabled Large-Scale Virtual Screening and Drug Discovery / Kim B.G., Nhan N.D., Lee S., Hwang S., Breton B. // Fourth IEEE International Conference on eScience. - 2008. - P. 666-671. DOI: https://doi.org/10.1109/eScience.2008.26

Jin H. Components and workflow based Grid programming environment for integrated image-processing applications / Jin H., Zheng R., Zhang Q., Li Y. // Concurrency and Computation: Practice and Experience. - 2006. - Vol. 18, N° 14. -P 1857-1869. DOI: https://doi.org/10.1002/cpe.1034

Published

2012-11-12

Issue

Section

Articles

How to Cite

INTEGRATED ENVIRONMENT OF AUTOMATIZATION OF WORK WITH GREAT VOLUMES OF DATA IN GRID. (2012). Medical Informatics and Engineering, 3. https://doi.org/10.11603/mie.1996-1960.2009.3.83